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OMOP standardization (Feature extraction)

Who is this for?

Institutions looking to combine image feature extraction (e.g., findings including tumor measurements), including AI results, with EHR data.

How do you parallelize?

  • Integrate into GRIP Imaging Pipelines
  • Use common tools such as Docker containers 
  • Add results to OMOP Common Data Model database

Tool Category: Brain Segmentation Feature Extraction (OMOP)

Function: OMOP standardization of features extracted from imaging-based algorithms

Tool type: Harmonization / Standardization

Key Capabilities:

  • Takes morphological features extracted from AI segmentation algorithms and transforms into the OMOP common data while maintain provenance to the images used as well as the algorithm.

Based on:

  • Imaging data model extension of the OMOP Common Data Model

Works With:

  • DICOM Studies / OMOP Data Model

Potential use cases:

  • Enables extraction of imaging features with provenance to the images and the algorithm.