Who is this for?
Researchers can use this with no programming experience, or the platform can automatically put all the imported DICOM images through this pipeline.
How do you parallelize?
Run the conversion for multiple subjects at a time.
GitHub
Tool Category: De-ID & “standardization” Pipeline
Function: Perform de-identification and standardize image types (e.g. T1w)
Tool Type: Imaging Workflow
Key Capabilities:
- Perform image de-identifcation
- Standardize image type
Works With:
- DICOM brain MR
Potential Use Cases:
- Prepare images for image analysis pipelines
Image interpretation according to FDA-approved guidelines for tau PET is time-consuming:
- Requires manual reorientation
- Manual delineation of a cerebellar region of interest
- Adjustment of the colorscale based on cerebellar counts
We developed a fully automated tool to:
- Reorient 18F-flortaucipir PET scans
- Trace a cerebellar ROI
- Automatically rescale the image